spark_auto_mapper_fhir.backbone_elements.molecular_sequence_roc

Module Contents

Classes

MolecularSequenceRoc

MolecularSequence.Roc
class spark_auto_mapper_fhir.backbone_elements.molecular_sequence_roc.MolecularSequenceRoc(*, id_=None, extension=None, modifierExtension=None, score=None, numTP=None, numFP=None, numFN=None, precision=None, sensitivity=None, fMeasure=None)

Bases: spark_auto_mapper_fhir.base_types.fhir_backbone_element_base.FhirBackboneElementBase

MolecularSequence.Roc

Raw data describing a biological sequence.

Raw data describing a biological sequence.

param id_

None

param extension

May be used to represent additional information that is not part of the basic

definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.

param modifierExtension

May be used to represent additional information that is not part of the basic

definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element’s descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.

Modifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).

param score

Invidual data point representing the GQ (genotype quality) score threshold.

param numTP

The number of true positives if the GQ score threshold was set to “score”

field value.
param numFP

The number of false positives if the GQ score threshold was set to “score”

field value.
param numFN

The number of false negatives if the GQ score threshold was set to “score”

field value.
param precision

Calculated precision if the GQ score threshold was set to “score” field value.

param sensitivity

Calculated sensitivity if the GQ score threshold was set to “score” field

value.
param fMeasure

Calculated fScore if the GQ score threshold was set to “score” field value.

Parameters